J4_7S9U_001

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7S9U|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S9U_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.2267

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7S9U|1|A|C|271
7S9U|1|A|C|272
*
7S9U|1|A|G|417
7S9U|1|A|A|418
7S9U|1|A|G|419
7S9U|1|A|U|420
7S9U|1|A|A|421
7S9U|1|A|C|422
*
7S9U|1|A|G|446
7S9U|1|A|G|447
7S9U|1|A|A|448
7S9U|1|A|A|449
7S9U|1|A|U|450
7S9U|1|A|C|451
7S9U|1|A|C|452
7S9U|1|A|G|453
*
7S9U|1|A|C|468
7S9U|1|A|A|469
7S9U|1|A|A|470
7S9U|1|A|G|471

Current chains

Chain A

RNA (2436-MER)

Nearby chains