J4_7S9U_007

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S9U_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.3141

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|G|1801
7S9U|1|A|A|1802
7S9U|1|A|C|1803
7S9U|1|A|U|1804
7S9U|1|A|G|1805
*
7S9U|1|A|C|1817
7S9U|1|A|A|1818
7S9U|1|A|C|1819
7S9U|1|A|A|1820
7S9U|1|A|G|1821
*
7S9U|1|A|U|1856
7S9U|1|A|G|1857
7S9U|1|A|A|1858
7S9U|1|A|C|1859
*
7S9U|1|A|G|2004
7S9U|1|A|C|2005
7S9U|1|A|A|2006
7S9U|1|A|A|2007
7S9U|1|A|C|2008

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2