3D structure

PDB id
7SA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Damaged 70S ribosome with PrfH bound
Experimental method
ELECTRON MICROSCOPY
Resolution
2.55 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
7SA4|1|1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7SA4_010 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.085
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

7SA4|1|1|C|2285
7SA4|1|1|G|2286
7SA4|1|1|A|2287
7SA4|1|1|A|2288
7SA4|1|1|G|2289
*
7SA4|1|1|U|2343
7SA4|1|1|U|2344
7SA4|1|1|G|2345
7SA4|1|1|A|2346
7SA4|1|1|C|2347
*
7SA4|1|1|G|2370
7SA4|1|1|G|2371
7SA4|1|1|U|2372
*
7SA4|1|1|A|2381
7SA4|1|1|G|2382
7SA4|1|1|G|2383

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27
Chain c
50S ribosomal protein L33
Chain e
50S ribosomal protein L35

Coloring options:


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