J4_7SAE_005

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7SAE|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SAE_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0961

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7SAE|1|A|G|1349
7SAE|1|A|U|1350
7SAE|1|A|U|1351
7SAE|1|A|U|1352
7SAE|1|A|C|1353
*
7SAE|1|A|G|1377
7SAE|1|A|G|1378
7SAE|1|A|U|1379
7SAE|1|A|U|1380
7SAE|1|A|A|1381
7SAE|1|A|G|1382
*
7SAE|1|A|C|1443
7SAE|1|A|C|1444
*
7SAE|1|A|G|1642
7SAE|1|A|C|1643
7SAE|1|A|C|1644
7SAE|1|A|C|1645
7SAE|1|A|G|1646
7SAE|1|A|U|1647
7SAE|1|A|A|1648
7SAE|1|A|C|1649

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34