J4_7SAE_008

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SAE_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.2884

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7SAE|1|A|G|1801
7SAE|1|A|A|1802
7SAE|1|A|C|1803
7SAE|1|A|U|1804
7SAE|1|A|G|1805
*
7SAE|1|A|C|1817
7SAE|1|A|A|1818
7SAE|1|A|C|1819
7SAE|1|A|A|1820
7SAE|1|A|G|1821
*
7SAE|1|A|U|1856
7SAE|1|A|G|1857
7SAE|1|A|A|1858
7SAE|1|A|C|1859
*
7SAE|1|A|G|2004
7SAE|1|A|C|2005
7SAE|1|A|A|2006
7SAE|1|A|A|2007
7SAE|1|A|C|2008

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain C

50S ribosomal protein L2