J4_7SAE_011

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

7SAE|1|A|A|2317, 7SAE|1|A|G|2411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SAE_011 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.2018

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

7SAE|1|A|C|2314
7SAE|1|A|A|2315
7SAE|1|A|A|2316
7SAE|1|A|A|2317
7SAE|1|A|G|2318
*
7SAE|1|A|U|2372
7SAE|1|A|U|2373
7SAE|1|A|G|2374
7SAE|1|A|A|2375
7SAE|1|A|C|2376
*
7SAE|1|A|G|2399
7SAE|1|A|G|2400
7SAE|1|A|G|2401
*
7SAE|1|A|C|2410
7SAE|1|A|G|2411
7SAE|1|A|G|2412

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain V

50S ribosomal protein L27