J4_7SSO_007

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSO_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0851

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7SSO|1|1|A|1772
7SSO|1|1|A|1773
7SSO|1|1|C|1774
7SSO|1|1|U|1775
7SSO|1|1|G|1776
*
7SSO|1|1|C|1788
7SSO|1|1|A|1789
7SSO|1|1|C|1790
7SSO|1|1|A|1791
7SSO|1|1|G|1792
*
7SSO|1|1|U|1827
7SSO|1|1|G|1828
7SSO|1|1|A|1829
7SSO|1|1|C|1830
*
7SSO|1|1|G|1975
7SSO|1|1|U|1976
7SSO|1|1|A|1977
7SSO|1|1|A|1978
7SSO|1|1|U|1979

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2