J4_7SYQ_006

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

7SYQ|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SYQ_006 not in the Motif Atlas

Homologous match to J4_8CRE_021

Geometric discrepancy: 0.151

The information below is about J4_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7SYQ|1|2|C|98
7SYQ|1|2|A|99
7SYQ|1|2|U|100
7SYQ|1|2|U|101
7SYQ|1|2|A|102
7SYQ|1|2|A|103
7SYQ|1|2|A|104
7SYQ|1|2|U|105
7SYQ|1|2|C|106
*
7SYQ|1|2|G|355
7SYQ|1|2|C|356
7SYQ|1|2|C|357
*
7SYQ|1|2|G|405
7SYQ|1|2|U|406
7SYQ|1|2|G|407
7SYQ|1|2|A|408
7SYQ|1|2|C|409
*
7SYQ|1|2|G|431
7SYQ|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain J

eS8

Chain M

uS17

Chain Y

uS12