J4_7SYS_002

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

7SYS|1|2|A|672, 7SYS|1|2|A|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SYS_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1115

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7SYS|1|2|A|671
7SYS|1|2|A|672
7SYS|1|2|G|673
*
7SYS|1|2|C|1032
7SYS|1|2|G|1033
7SYS|1|2|A|1034
7SYS|1|2|A|1035
7SYS|1|2|A|1036
7SYS|1|2|G|1037
*
7SYS|1|2|C|1078
7SYS|1|2|C|1079
7SYS|1|2|A|1080
7SYS|1|2|U|1081
7SYS|1|2|A|1082
7SYS|1|2|A|1083
7SYS|1|2|A|1084
7SYS|1|2|C|1085
7SYS|1|2|G|1086
7SYS|1|2|A|1087
7SYS|1|2|U|1088
7SYS|1|2|G|1089
*
7SYS|1|2|U|1160
7SYS|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain P

uS11

Chain X

uS8

Chain Y

uS12

Chain b

eS26

Chain n

eL41