J4_7SYW_007

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

7SYW|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SYW_007 not in the Motif Atlas

Homologous match to J4_8CRE_021

Geometric discrepancy: 0.1642

The information below is about J4_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.2

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

3

Unit IDs

7SYW|1|2|C|98
7SYW|1|2|A|99
7SYW|1|2|U|100
7SYW|1|2|U|101
7SYW|1|2|A|102
7SYW|1|2|A|103
7SYW|1|2|A|104
7SYW|1|2|U|105
7SYW|1|2|C|106
*
7SYW|1|2|G|355
7SYW|1|2|C|356
7SYW|1|2|C|357
*
7SYW|1|2|G|405
7SYW|1|2|U|406
7SYW|1|2|G|407
7SYW|1|2|A|408
7SYW|1|2|C|409
*
7SYW|1|2|G|431
7SYW|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

eS8

Chain M

uS17

Chain Y

uS12