J4_7TOO_008
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 7TOO|1|A25S|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7TOO_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.0967
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7TOO|1|A25S|C|2654
7TOO|1|A25S|U|2655
7TOO|1|A25S|A|2656
7TOO|1|A25S|A|2657
7TOO|1|A25S|G|2658
*
7TOO|1|A25S|U|2712
7TOO|1|A25S|U|2713
7TOO|1|A25S|G|2714
7TOO|1|A25S|A|2715
7TOO|1|A25S|U|2716
*
7TOO|1|A25S|A|2740
7TOO|1|A25S|C|2741
7TOO|1|A25S|C|2742
*
7TOO|1|A25S|G|2751
7TOO|1|A25S|U|2752
7TOO|1|A25S|G|2753
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL05
- RPL5 isoform 1
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL29
- RPL29 isoform 1
- Chain AL42
- 60S ribosomal protein L42-A
Coloring options: