J4_7TOQ_010
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7TOQ_010 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1047
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOQ|1|A25S|G|3634
7TOQ|1|A25S|A|3635
7TOQ|1|A25S|C|3636
7TOQ|1|A25S|U|3637
7TOQ|1|A25S|G|3638
*
7TOQ|1|A25S|C|3650
7TOQ|1|A25S|A|3651
7TOQ|1|A25S|A|3652
7TOQ|1|A25S|A|3653
7TOQ|1|A25S|G|3654
*
7TOQ|1|A25S|U|3690
7TOQ|1|A25S|G|3691
7TOQ|1|A25S|A|3692
7TOQ|1|A25S|U|3693
7TOQ|1|A25S|U|3694
*
7TOQ|1|A25S|A|3821
7TOQ|1|A25S|U|3822
7TOQ|1|A25S|G|3823
7TOQ|1|A25S|A|3824
7TOQ|1|A25S|A|3825
7TOQ|1|A25S|C|3826
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL02
- uL2
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
Coloring options: