J4_7TOQ_011

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7TOQ|1|A25S|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOQ_011 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.2206

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7TOQ|1|A25S|C|3696
7TOQ|1|A25S|U|3697
7TOQ|1|A25S|G|3698
*
7TOQ|1|A25S|C|3752
7TOQ|1|A25S|G|3753
*
7TOQ|1|A25S|C|3771
7TOQ|1|A25S|U|3772
7TOQ|1|A25S|U|3773
7TOQ|1|A25S|A|3774
7TOQ|1|A25S|A|3775
7TOQ|1|A25S|G|3776
7TOQ|1|A25S|G|3777
7TOQ|1|A25S|U|3778
7TOQ|1|A25S|A|3779
7TOQ|1|A25S|G|3780
*
7TOQ|1|A25S|U|3814
7TOQ|1|A25S|G|3815
7TOQ|1|A25S|A|3816
7TOQ|1|A25S|A|3817
7TOQ|1|A25S|U|3818
7TOQ|1|A25S|G|3819

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

uL2

Chain AL41

eL41