J4_7TOS_001

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7TOS|1|16S|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2736

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TOS|1|16S|G|115
7TOS|1|16S|A|116
7TOS|1|16S|G|117
7TOS|1|16S|U|118
7TOS|1|16S|A|119
7TOS|1|16S|A|120
7TOS|1|16S|U|121
7TOS|1|16S|G|122
*
7TOS|1|16S|U|239
7TOS|1|16S|G|240
*
7TOS|1|16S|C|286
7TOS|1|16S|U|287
7TOS|1|16S|A|288
7TOS|1|16S|G|289
*
7TOS|1|16S|C|311
7TOS|1|16S|C|312

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16

Chain S17

30S ribosomal protein S17