J4_7TOS_004

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7TOS|1|23S|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1697

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|C|268
7TOS|1|23S|C|269
*
7TOS|1|23S|G|370
7TOS|1|23S|A|371
7TOS|1|23S|G|372
7TOS|1|23S|U|373
7TOS|1|23S|A|374
7TOS|1|23S|G|375
*
7TOS|1|23S|U|399
7TOS|1|23S|G|400
7TOS|1|23S|A|401
7TOS|1|23S|A|402
7TOS|1|23S|U|403
7TOS|1|23S|A|404
7TOS|1|23S|U|405
7TOS|1|23S|G|406
*
7TOS|1|23S|C|421
7TOS|1|23S|A|422
7TOS|1|23S|A|423
7TOS|1|23S|G|424

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L09

50S ribosomal protein L9

Chain L28

50S ribosomal protein L28