J4_7TOS_006

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7TOS|1|23S|G|1271, 7TOS|1|23S|A|1272, 7TOS|1|23S|U|1273, 7TOS|1|23S|A|1275, 7TOS|1|23S|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_006 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1191

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7TOS|1|23S|C|1270
7TOS|1|23S|G|1271
7TOS|1|23S|A|1272
7TOS|1|23S|U|1273
7TOS|1|23S|A|1274
7TOS|1|23S|A|1275
7TOS|1|23S|A|1276
*
7TOS|1|23S|U|1294
7TOS|1|23S|C|1295
*
7TOS|1|23S|G|1645
7TOS|1|23S|C|1646
7TOS|1|23S|U|1647
7TOS|1|23S|U|1648
*
7TOS|1|23S|A|2009
7TOS|1|23S|G|2010

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

50S ribosomal protein L17

Chain L22

50S ribosomal protein L22

Chain L32

50S ribosomal protein L32