J4_7TOS_008

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7TOS|1|23S|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_008 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0939

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|U|1313
7TOS|1|23S|C|1314
*
7TOS|1|23S|G|1338
7TOS|1|23S|G|1339
7TOS|1|23S|U|1340
7TOS|1|23S|G|1341
7TOS|1|23S|A|1342
7TOS|1|23S|G|1343
*
7TOS|1|23S|C|1404
7TOS|1|23S|U|1405
*
7TOS|1|23S|A|1597
7TOS|1|23S|A|1598
7TOS|1|23S|U|1599
7TOS|1|23S|C|1600
7TOS|1|23S|G|1601
7TOS|1|23S|U|1602
7TOS|1|23S|A|1603

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23