J4_7TOS_013

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0995

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOS|1|23S|G|2643
7TOS|1|23S|G|2644
7TOS|1|23S|G|2645
7TOS|1|23S|C|2646
*
7TOS|1|23S|G|2674
7TOS|1|23S|A|2675
7TOS|1|23S|C|2676
*
7TOS|1|23S|G|2731
7TOS|1|23S|G|2732
7TOS|1|23S|A|2733
7TOS|1|23S|A|2734
7TOS|1|23S|G|2735
*
7TOS|1|23S|U|2769
7TOS|1|23S|G|2770
7TOS|1|23S|C|2771

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L13

50S ribosomal protein L13

Chain L14

50S ribosomal protein L14