J4_7U2J_005

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

7U2J|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0527

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7U2J|1|1A|U|1313
7U2J|1|1A|C|1314
*
7U2J|1|1A|G|1338
7U2J|1|1A|G|1339
7U2J|1|1A|U|1340
7U2J|1|1A|U|1341
7U2J|1|1A|A|1342
7U2J|1|1A|G|1343
*
7U2J|1|1A|C|1404
7U2J|1|1A|U|1405
*
7U2J|1|1A|A|1597
7U2J|1|1A|C|1598
7U2J|1|1A|C|1599
7U2J|1|1A|C|1600
7U2J|1|1A|G|1601
7U2J|1|1A|U|1602
7U2J|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23