J4_7U2J_007

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0404

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7U2J|1|1A|G|1772
7U2J|1|1A|A|1773
7U2J|1|1A|C|1774
7U2J|1|1A|U|1775
7U2J|1|1A|G|1776
*
7U2J|1|1A|C|1788
7U2J|1|1A|A|1789
7U2J|1|1A|C|1790
7U2J|1|1A|A|1791
7U2J|1|1A|G|1792
*
7U2J|1|1A|C|1827
7U2J|1|1A|G|1828
7U2J|1|1A|A|1829
7U2J|1|1A|C|1830
*
7U2J|1|1A|G|1975
7U2J|1|1A|U|1976
7U2J|1|1A|A|1977
7U2J|1|1A|A|1978
7U2J|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2