J4_7UNU_001

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

7UNU|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1288

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNU|1|A|C|268
7UNU|1|A|C|269
*
7UNU|1|A|G|361
7UNU|1|A|A|362
7UNU|1|A|G|363
7UNU|1|A|U|364
7UNU|1|A|A|365
7UNU|1|A|G|366
*
7UNU|1|A|U|390
7UNU|1|A|G|391
7UNU|1|A|A|392
7UNU|1|A|A|393
7UNU|1|A|C|394
7UNU|1|A|A|395
7UNU|1|A|U|396
7UNU|1|A|G|397
*
7UNU|1|A|C|412
7UNU|1|A|A|413
7UNU|1|A|A|414
7UNU|1|A|G|415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28