J4_7UNV_001

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

7UNV|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNV_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1253

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|C|268
7UNV|1|A|C|269
*
7UNV|1|A|G|361
7UNV|1|A|A|362
7UNV|1|A|G|363
7UNV|1|A|U|364
7UNV|1|A|A|365
7UNV|1|A|G|366
*
7UNV|1|A|U|390
7UNV|1|A|G|391
7UNV|1|A|A|392
7UNV|1|A|A|393
7UNV|1|A|C|394
7UNV|1|A|A|395
7UNV|1|A|U|396
7UNV|1|A|G|397
*
7UNV|1|A|C|412
7UNV|1|A|A|413
7UNV|1|A|A|414
7UNV|1|A|G|415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28