J4_7UNW_008

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNW_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.05

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UNW|1|A|G|1759
7UNW|1|A|A|1760
7UNW|1|A|C|1761
7UNW|1|A|U|1762
7UNW|1|A|G|1763
*
7UNW|1|A|C|1775
7UNW|1|A|A|1776
7UNW|1|A|C|1777
7UNW|1|A|A|1778
7UNW|1|A|G|1779
*
7UNW|1|A|U|1814
7UNW|1|A|G|1815
7UNW|1|A|A|1816
7UNW|1|A|C|1817
*
7UNW|1|A|G|1962
7UNW|1|A|U|1963
7UNW|1|A|A|1964
7UNW|1|A|A|1965
7UNW|1|A|C|1966

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2