J4_7UPH_001
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7UPH|1|I|U|120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_001 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2251
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|G|114
7UPH|1|I|A|115
7UPH|1|I|G|116
7UPH|1|I|U|117
7UPH|1|I|A|118
7UPH|1|I|A|119
7UPH|1|I|U|120
7UPH|1|I|G|121
*
7UPH|1|I|U|238
7UPH|1|I|G|239
*
7UPH|1|I|C|285
7UPH|1|I|U|286
7UPH|1|I|A|287
7UPH|1|I|G|288
*
7UPH|1|I|C|310
7UPH|1|I|C|311
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S16
- Chain D
- 30S ribosomal protein S17
Coloring options: