3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7UPH|1|I|U|120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UPH_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2251
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7UPH|1|I|G|114
7UPH|1|I|A|115
7UPH|1|I|G|116
7UPH|1|I|U|117
7UPH|1|I|A|118
7UPH|1|I|A|119
7UPH|1|I|U|120
7UPH|1|I|G|121
*
7UPH|1|I|U|238
7UPH|1|I|G|239
*
7UPH|1|I|C|285
7UPH|1|I|U|286
7UPH|1|I|A|287
7UPH|1|I|G|288
*
7UPH|1|I|C|310
7UPH|1|I|C|311

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain C
30S ribosomal protein S16
Chain D
30S ribosomal protein S17

Coloring options:


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