J4_7UPH_002
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 7UPH|1|I|C|182, 7UPH|1|I|A|196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.2966
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7UPH|1|I|G|141
7UPH|1|I|A|142
7UPH|1|I|G|143
*
7UPH|1|I|C|177
7UPH|1|I|A|178
7UPH|1|I|U|179
7UPH|1|I|A|180
7UPH|1|I|A|181
7UPH|1|I|C|182
7UPH|1|I|G|183
*
7UPH|1|I|C|192
7UPH|1|I|C|193
7UPH|1|I|A|194
7UPH|1|I|A|195
7UPH|1|I|A|196
7UPH|1|I|G|197
*
7UPH|1|I|U|218
7UPH|1|I|G|219
7UPH|1|I|C|220
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S20
Coloring options: