3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7UPH|1|I|C|182, 7UPH|1|I|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UPH_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.2966
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7UPH|1|I|G|141
7UPH|1|I|A|142
7UPH|1|I|G|143
*
7UPH|1|I|C|177
7UPH|1|I|A|178
7UPH|1|I|U|179
7UPH|1|I|A|180
7UPH|1|I|A|181
7UPH|1|I|C|182
7UPH|1|I|G|183
*
7UPH|1|I|C|192
7UPH|1|I|C|193
7UPH|1|I|A|194
7UPH|1|I|A|195
7UPH|1|I|A|196
7UPH|1|I|G|197
*
7UPH|1|I|U|218
7UPH|1|I|G|219
7UPH|1|I|C|220

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain G
30S ribosomal protein S20

Coloring options:


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