J4_7UPH_004

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7UPH|1|I|U|1905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UPH_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4149

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|C|1768
7UPH|1|I|C|1769
*
7UPH|1|I|G|1870
7UPH|1|I|A|1871
7UPH|1|I|G|1872
7UPH|1|I|U|1873
7UPH|1|I|A|1874
7UPH|1|I|G|1875
*
7UPH|1|I|U|1899
7UPH|1|I|G|1900
7UPH|1|I|A|1901
7UPH|1|I|A|1902
7UPH|1|I|U|1903
7UPH|1|I|A|1904
7UPH|1|I|U|1905
7UPH|1|I|G|1906
*
7UPH|1|I|C|1921
7UPH|1|I|A|1922
7UPH|1|I|A|1923
7UPH|1|I|G|1924

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain w

50S ribosomal protein L28