3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
7UPH|1|I|G|2765, 7UPH|1|I|A|2766, 7UPH|1|I|U|2767, 7UPH|1|I|A|2768, 7UPH|1|I|A|2769, 7UPH|1|I|C|3140, 7UPH|1|I|U|3141
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UPH_007 not in the Motif Atlas
Homologous match to J4_7A0S_004
Geometric discrepancy: 0.2054
The information below is about J4_7A0S_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|C|2764
7UPH|1|I|G|2765
7UPH|1|I|A|2766
7UPH|1|I|U|2767
7UPH|1|I|A|2768
7UPH|1|I|A|2769
7UPH|1|I|A|2770
*
7UPH|1|I|U|2788
7UPH|1|I|C|2789
*
7UPH|1|I|G|3139
7UPH|1|I|C|3140
7UPH|1|I|U|3141
7UPH|1|I|U|3142
*
7UPH|1|I|A|3503
7UPH|1|I|G|3504

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain V
50S ribosomal protein L17
Chain i
50S ribosomal protein L32
Chain r
50S ribosomal protein L22

Coloring options:


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