J4_7UPH_007
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7UPH|1|I|G|2765, 7UPH|1|I|A|2766, 7UPH|1|I|U|2767, 7UPH|1|I|A|2768, 7UPH|1|I|A|2769, 7UPH|1|I|C|3140, 7UPH|1|I|U|3141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_007 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.2054
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|C|2764
7UPH|1|I|G|2765
7UPH|1|I|A|2766
7UPH|1|I|U|2767
7UPH|1|I|A|2768
7UPH|1|I|A|2769
7UPH|1|I|A|2770
*
7UPH|1|I|U|2788
7UPH|1|I|C|2789
*
7UPH|1|I|G|3139
7UPH|1|I|C|3140
7UPH|1|I|U|3141
7UPH|1|I|U|3142
*
7UPH|1|I|A|3503
7UPH|1|I|G|3504
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain V
- 50S ribosomal protein L17
- Chain i
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L22
Coloring options: