J4_7UPH_008

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7UPH|1|I|G|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UPH_008 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.2747

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|U|2807
7UPH|1|I|C|2808
*
7UPH|1|I|G|2832
7UPH|1|I|G|2833
7UPH|1|I|U|2834
7UPH|1|I|G|2835
7UPH|1|I|A|2836
7UPH|1|I|G|2837
*
7UPH|1|I|C|2898
7UPH|1|I|U|2899
*
7UPH|1|I|A|3091
7UPH|1|I|A|3092
7UPH|1|I|U|3093
7UPH|1|I|C|3094
7UPH|1|I|G|3095
7UPH|1|I|U|3096
7UPH|1|I|A|3097

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain s

50S ribosomal protein L23