J4_7UPH_015
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_015 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.3055
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7UPH|1|I|G|4137
7UPH|1|I|G|4138
7UPH|1|I|G|4139
7UPH|1|I|C|4140
*
7UPH|1|I|G|4168
7UPH|1|I|A|4169
7UPH|1|I|C|4170
*
7UPH|1|I|G|4225
7UPH|1|I|G|4226
7UPH|1|I|A|4227
7UPH|1|I|A|4228
7UPH|1|I|G|4229
*
7UPH|1|I|U|4263
7UPH|1|I|G|4264
7UPH|1|I|C|4265
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L13
- Chain S
- 50S ribosomal protein L14
Coloring options: