J4_7UVV_008

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AACUG*CAUAG*UGAU*AUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVV_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0686

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UVV|1|A|A|1768
7UVV|1|A|A|1769
7UVV|1|A|C|1770
7UVV|1|A|U|1771
7UVV|1|A|G|1772
*
7UVV|1|A|C|1784
7UVV|1|A|A|1785
7UVV|1|A|U|1786
7UVV|1|A|A|1787
7UVV|1|A|G|1788
*
7UVV|1|A|U|1823
7UVV|1|A|G|1824
7UVV|1|A|A|1825
7UVV|1|A|U|1826
*
7UVV|1|A|A|1971
7UVV|1|A|U|1972
7UVV|1|A|A|1973
7UVV|1|A|A|1974
7UVV|1|A|U|1975

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2