J4_7V2L_002

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7V2L_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1048

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7V2L|1|A|G|137
7V2L|1|A|A|138
7V2L|1|A|G|139
*
7V2L|1|A|C|173
7V2L|1|A|A|174
7V2L|1|A|U|175
7V2L|1|A|G|176
7V2L|1|A|U|177
7V2L|1|A|G|178
*
7V2L|1|A|C|201
7V2L|1|A|A|202
7V2L|1|A|A|203
7V2L|1|A|A|204
7V2L|1|A|G|205
*
7V2L|1|A|C|215
7V2L|1|A|G|216
7V2L|1|A|C|217

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20