J4_7V2M_002

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

7V2M|1|A|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7V2M_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.118

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7V2M|1|A|G|137
7V2M|1|A|A|138
7V2M|1|A|G|139
*
7V2M|1|A|C|173
7V2M|1|A|A|174
7V2M|1|A|U|175
7V2M|1|A|G|176
7V2M|1|A|U|177
7V2M|1|A|G|178
*
7V2M|1|A|C|201
7V2M|1|A|A|202
7V2M|1|A|A|203
7V2M|1|A|A|204
7V2M|1|A|G|205
*
7V2M|1|A|C|215
7V2M|1|A|G|216
7V2M|1|A|C|217

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20