J4_7WTM_002

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

7WTM|1|C2|A|623, 7WTM|1|C2|A|1026, 7WTM|1|C2|C|1028, 7WTM|1|C2|U|1029, 7WTM|1|C2|A|1030, 7WTM|1|C2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7WTM_002 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0904

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTM|1|C2|A|622
7WTM|1|C2|A|623
7WTM|1|C2|G|624
*
7WTM|1|C2|C|975
7WTM|1|C2|G|976
7WTM|1|C2|A|977
7WTM|1|C2|A|978
7WTM|1|C2|A|979
7WTM|1|C2|G|980
*
7WTM|1|C2|C|1021
7WTM|1|C2|C|1022
7WTM|1|C2|A|1023
7WTM|1|C2|U|1024
7WTM|1|C2|A|1025
7WTM|1|C2|A|1026
7WTM|1|C2|A|1027
7WTM|1|C2|C|1028
7WTM|1|C2|U|1029
7WTM|1|C2|A|1030
7WTM|1|C2|U|1031
7WTM|1|C2|G|1032
*
7WTM|1|C2|U|1103
7WTM|1|C2|U|1104

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain JL

Dimethyladenosine transferase

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14-A

Chain SW

40S ribosomal protein S22-A

Chain SX

40S ribosomal protein S23-A