J4_7WTT_002
3D structure
- PDB id
- 7WTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7WTT|1|2|A|672, 7WTT|1|2|A|1083, 7WTT|1|2|C|1085, 7WTT|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7WTT_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.2101
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7WTT|1|2|A|671
7WTT|1|2|A|672
7WTT|1|2|G|673
*
7WTT|1|2|C|1032
7WTT|1|2|G|1033
7WTT|1|2|A|1034
7WTT|1|2|A|1035
7WTT|1|2|A|1036
7WTT|1|2|G|1037
*
7WTT|1|2|C|1078
7WTT|1|2|C|1079
7WTT|1|2|A|1080
7WTT|1|2|U|1081
7WTT|1|2|A|1082
7WTT|1|2|A|1083
7WTT|1|2|A|1084
7WTT|1|2|C|1085
7WTT|1|2|G|1086
7WTT|1|2|A|1087
7WTT|1|2|U|1088
7WTT|1|2|G|1089
*
7WTT|1|2|U|1160
7WTT|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S11
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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