3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACGAUG*UU
Length
23 nucleotides
Bulged bases
7WTU|1|2|A|1083, 7WTU|1|2|C|1085, 7WTU|1|2|A|1087
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7WTU_002 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.2055
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7WTU|1|2|A|671
7WTU|1|2|A|672
7WTU|1|2|G|673
*
7WTU|1|2|C|1032
7WTU|1|2|G|1033
7WTU|1|2|A|1034
7WTU|1|2|A|1035
7WTU|1|2|A|1036
7WTU|1|2|G|1037
*
7WTU|1|2|C|1078
7WTU|1|2|C|1079
7WTU|1|2|A|1080
7WTU|1|2|U|1081
7WTU|1|2|A|1082
7WTU|1|2|A|1083
7WTU|1|2|A|1084
7WTU|1|2|C|1085
7WTU|1|2|G|1086
7WTU|1|2|A|1087
7WTU|1|2|U|1088
7WTU|1|2|G|1089
*
7WTU|1|2|U|1160
7WTU|1|2|U|1161

Current chains

Chain 2
18S rRNA

Nearby chains

Chain L
40S ribosomal protein S11
Chain N
40S ribosomal protein S13
Chain O
40S ribosomal protein S14
Chain W
40S ribosomal protein S15a
Chain X
40S ribosomal protein S23
Chain u
Pre-rRNA-processing protein TSR1 homolog

Coloring options:


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