J4_7WTX_002
3D structure
- PDB id
- 7WTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7WTX|1|2|A|672, 7WTX|1|2|A|1083, 7WTX|1|2|C|1085, 7WTX|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7WTX_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1074
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7WTX|1|2|A|671
7WTX|1|2|A|672
7WTX|1|2|G|673
*
7WTX|1|2|C|1032
7WTX|1|2|G|1033
7WTX|1|2|A|1034
7WTX|1|2|A|1035
7WTX|1|2|A|1036
7WTX|1|2|G|1037
*
7WTX|1|2|C|1078
7WTX|1|2|C|1079
7WTX|1|2|A|1080
7WTX|1|2|U|1081
7WTX|1|2|A|1082
7WTX|1|2|A|1083
7WTX|1|2|A|1084
7WTX|1|2|C|1085
7WTX|1|2|G|1086
7WTX|1|2|A|1087
7WTX|1|2|U|1088
7WTX|1|2|G|1089
*
7WTX|1|2|U|1160
7WTX|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S11
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
- Chain t
- Protein LTV1 homolog
- Chain x
- RNA-binding protein PNO1
- Chain y
- RNA-binding protein NOB1
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