J4_7XAM_004

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7XAM|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XAM_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0967

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|G|1425
7XAM|1|A|G|1426
7XAM|1|A|U|1427
7XAM|1|A|U|1428
7XAM|1|A|C|1429
*
7XAM|1|A|G|1453
7XAM|1|A|G|1454
7XAM|1|A|U|1455
7XAM|1|A|G|1456
7XAM|1|A|A|1457
7XAM|1|A|G|1458
*
7XAM|1|A|C|1519
7XAM|1|A|C|1520
*
7XAM|1|A|G|1815
7XAM|1|A|C|1816
7XAM|1|A|C|1817
7XAM|1|A|C|1818
7XAM|1|A|G|1819
7XAM|1|A|U|1820
7XAM|1|A|A|1821
7XAM|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34