J4_7XNX_002
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 7XNX|1|L1|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7XNX_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1121
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7XNX|1|L1|C|111
7XNX|1|L1|C|112
*
7XNX|1|L1|G|278
7XNX|1|L1|A|279
7XNX|1|L1|G|280
7XNX|1|L1|U|281
7XNX|1|L1|C|282
7XNX|1|L1|G|283
*
7XNX|1|L1|C|304
7XNX|1|L1|A|305
7XNX|1|L1|A|306
7XNX|1|L1|A|307
7XNX|1|L1|G|308
7XNX|1|L1|C|309
7XNX|1|L1|G|310
*
7XNX|1|L1|U|327
7XNX|1|L1|A|328
7XNX|1|L1|A|329
7XNX|1|L1|G|330
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
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