J4_7XNX_012
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7XNX|1|L1|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7XNX_012 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2028
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7XNX|1|L1|C|4231
7XNX|1|L1|U|4232
7XNX|1|L1|A|4233
7XNX|1|L1|A|4234
7XNX|1|L1|G|4235
*
7XNX|1|L1|U|4289
7XNX|1|L1|U|4290
7XNX|1|L1|G|4291
7XNX|1|L1|A|4292
7XNX|1|L1|PSU|4293
*
7XNX|1|L1|A|4317
7XNX|1|L1|C|4318
7XNX|1|L1|C|4319
*
7XNX|1|L1|G|4328
7XNX|1|L1|G|4329
7XNX|1|L1|G|4330
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: