J4_7XNY_004

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

7XNY|1|L1|A|2366, 7XNY|1|L1|U|2369, 7XNY|1|L1|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|OMC|2365
7XNY|1|L1|A|2366
7XNY|1|L1|A|2367
7XNY|1|L1|A|2368
7XNY|1|L1|U|2369
7XNY|1|L1|A|2370
7XNY|1|L1|U|2371
*
7XNY|1|L1|A|2389
7XNY|1|L1|G|2390
7XNY|1|L1|G|2391
*
7XNY|1|L1|OMC|2824
7XNY|1|L1|A|2825
7XNY|1|L1|U|2826
7XNY|1|L1|G|2827
7XNY|1|L1|U|2828
7XNY|1|L1|U|2829
*
7XNY|1|L1|A|3856
7XNY|1|L1|G|3857

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31