J4_7Y41_004

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7Y41|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1031

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7Y41|1|A|G|1425
7Y41|1|A|G|1426
7Y41|1|A|U|1427
7Y41|1|A|U|1428
7Y41|1|A|C|1429
*
7Y41|1|A|G|1453
7Y41|1|A|G|1454
7Y41|1|A|U|1455
7Y41|1|A|G|1456
7Y41|1|A|A|1457
7Y41|1|A|G|1458
*
7Y41|1|A|C|1519
7Y41|1|A|C|1520
*
7Y41|1|A|G|1815
7Y41|1|A|C|1816
7Y41|1|A|C|1817
7Y41|1|A|C|1818
7Y41|1|A|G|1819
7Y41|1|A|U|1820
7Y41|1|A|A|1821
7Y41|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34