J4_7Y41_007

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0641

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7Y41|1|A|G|1989
7Y41|1|A|A|1990
7Y41|1|A|C|1991
7Y41|1|A|U|1992
7Y41|1|A|G|1993
*
7Y41|1|A|C|2005
7Y41|1|A|A|2006
7Y41|1|A|C|2007
7Y41|1|A|A|2008
7Y41|1|A|G|2009
*
7Y41|1|A|U|2044
7Y41|1|A|G|2045
7Y41|1|A|A|2046
7Y41|1|A|C|2047
*
7Y41|1|A|G|2199
7Y41|1|A|U|2200
7Y41|1|A|A|2201
7Y41|1|A|A|2202
7Y41|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2