J4_7YLA_010
3D structure
- PDB id
- 7YLA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-HflX complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 7YLA|1|I|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7YLA_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0763
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7YLA|1|I|C|2285
7YLA|1|I|G|2286
7YLA|1|I|A|2287
7YLA|1|I|A|2288
7YLA|1|I|G|2289
*
7YLA|1|I|U|2343
7YLA|1|I|U|2344
7YLA|1|I|G|2345
7YLA|1|I|A|2346
7YLA|1|I|C|2347
*
7YLA|1|I|G|2370
7YLA|1|I|G|2371
7YLA|1|I|U|2372
*
7YLA|1|I|A|2381
7YLA|1|I|G|2382
7YLA|1|I|G|2383
Current chains
- Chain I
- Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome
Nearby chains
- Chain W
- 50S ribosomal protein L18
- Chain e
- 50S ribosomal protein L27
- Chain j
- 50S ribosomal protein L33
- Chain l
- 50S ribosomal protein L35
Coloring options: