J4_7Z20_001

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7Z20|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Z20_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0992

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7Z20|1|b|C|268
7Z20|1|b|C|269
*
7Z20|1|b|G|370
7Z20|1|b|A|371
7Z20|1|b|G|372
7Z20|1|b|U|373
7Z20|1|b|A|374
7Z20|1|b|G|375
*
7Z20|1|b|U|399
7Z20|1|b|G|400
7Z20|1|b|A|401
7Z20|1|b|A|402
7Z20|1|b|U|403
7Z20|1|b|A|404
7Z20|1|b|U|405
7Z20|1|b|G|406
*
7Z20|1|b|C|421
7Z20|1|b|A|422
7Z20|1|b|A|423
7Z20|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9