J4_7Z20_004
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7Z20|1|b|G|1270, 7Z20|1|b|A|1271, 7Z20|1|b|U|1272, 7Z20|1|b|U|1646
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7Z20_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0491
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7Z20|1|b|C|1269
7Z20|1|b|G|1270
7Z20|1|b|A|1271
7Z20|1|b|U|1272
7Z20|1|b|A|1273
7Z20|1|b|A|1274
7Z20|1|b|A|1275
*
7Z20|1|b|U|1293
7Z20|1|b|C|1294
*
7Z20|1|b|G|1644
7Z20|1|b|C|1645
7Z20|1|b|U|1646
7Z20|1|b|U|1647
*
7Z20|1|b|A|2008
7Z20|1|b|G|2009
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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