J4_7ZJW_005

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

7ZJW|1|L5|A|2209, 7ZJW|1|L5|U|2212, 7ZJW|1|L5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|OMC|2208
7ZJW|1|L5|A|2209
7ZJW|1|L5|A|2210
7ZJW|1|L5|A|2211
7ZJW|1|L5|U|2212
7ZJW|1|L5|A|2213
7ZJW|1|L5|U|2214
*
7ZJW|1|L5|A|2232
7ZJW|1|L5|G|2233
7ZJW|1|L5|G|2234
*
7ZJW|1|L5|OMC|2667
7ZJW|1|L5|A|2668
7ZJW|1|L5|U|2669
7ZJW|1|L5|G|2670
7ZJW|1|L5|U|2671
7ZJW|1|L5|U|2672
*
7ZJW|1|L5|A|3588
7ZJW|1|L5|G|3589

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lg

60S ribosomal protein eL31