J4_7ZJW_014

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7ZJW|1|L5|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|G|4333
7ZJW|1|L5|U|4334
7ZJW|1|L5|A|4335
7ZJW|1|L5|A2M|4336
*
7ZJW|1|L5|OMU|4366
7ZJW|1|L5|C|4367
*
7ZJW|1|L5|G|4422
7ZJW|1|L5|U|4423
7ZJW|1|L5|G|4424
*
7ZJW|1|L5|C|4458
7ZJW|1|L5|G|4459
7ZJW|1|L5|C|4460
7ZJW|1|L5|C|4461

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein uL13

Chain LY

60S ribosomal protein L23