J4_7ZOD_008

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZOD_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0432

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ZOD|1|b|A|1772
7ZOD|1|b|A|1773
7ZOD|1|b|C|1774
7ZOD|1|b|U|1775
7ZOD|1|b|G|1776
*
7ZOD|1|b|C|1788
7ZOD|1|b|A|1789
7ZOD|1|b|C|1790
7ZOD|1|b|A|1791
7ZOD|1|b|G|1792
*
7ZOD|1|b|U|1827
7ZOD|1|b|G|1828
7ZOD|1|b|A|1829
7ZOD|1|b|C|1830
*
7ZOD|1|b|G|1975
7ZOD|1|b|U|1976
7ZOD|1|b|A|1977
7ZOD|1|b|A|1978
7ZOD|1|b|U|1979

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2