J4_7ZP8_001

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ZP8|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZP8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2002

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|C|268
7ZP8|1|b|C|269
*
7ZP8|1|b|G|370
7ZP8|1|b|A|371
7ZP8|1|b|G|372
7ZP8|1|b|U|373
7ZP8|1|b|A|374
7ZP8|1|b|G|375
*
7ZP8|1|b|U|399
7ZP8|1|b|G|400
7ZP8|1|b|A|401
7ZP8|1|b|A|402
7ZP8|1|b|U|403
7ZP8|1|b|A|404
7ZP8|1|b|U|405
7ZP8|1|b|G|406
*
7ZP8|1|b|C|421
7ZP8|1|b|A|422
7ZP8|1|b|A|423
7ZP8|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9