J4_7ZPQ_002

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

7ZPQ|1|2|A|623, 7ZPQ|1|2|A|1026, 7ZPQ|1|2|C|1028, 7ZPQ|1|2|U|1029, 7ZPQ|1|2|A|1030, 7ZPQ|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZPQ_002 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0577

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|2|A|622
7ZPQ|1|2|A|623
7ZPQ|1|2|G|624
*
7ZPQ|1|2|C|975
7ZPQ|1|2|G|976
7ZPQ|1|2|A|977
7ZPQ|1|2|A|978
7ZPQ|1|2|A|979
7ZPQ|1|2|G|980
*
7ZPQ|1|2|C|1021
7ZPQ|1|2|C|1022
7ZPQ|1|2|A|1023
7ZPQ|1|2|U|1024
7ZPQ|1|2|A|1025
7ZPQ|1|2|A|1026
7ZPQ|1|2|A|1027
7ZPQ|1|2|C|1028
7ZPQ|1|2|U|1029
7ZPQ|1|2|A|1030
7ZPQ|1|2|U|1031
7ZPQ|1|2|G|1032
*
7ZPQ|1|2|U|1103
7ZPQ|1|2|U|1104

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AL

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S13

Chain AO

40S ribosomal protein S14-B

Chain AW

RPS22A isoform 1

Chain AX

40S ribosomal protein S23-A

Chain Aa

RPS26B isoform 1

Chain Bm

RPL41A isoform 1